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Resource List

Arabidopsis thaliana Arabidopsis thaliana
Brachypodium Brachypodium distachyon
populus Populus nigra
oryza Oryza sativa
lotus Lotus japonicus
lycopersicom Lycopersicon esculentum Mill
striga Striga hermonthica
nicotiana Nicotiana tabacum
(BY-2 cell)
brassica Brassica rapa
thellungiella Thellungiella halophila
physcomitrella Physcomitrella patens
manihot Manihot esculenta Crantz

T. halophila full-length cDNA clones

This resource has been developed and deposited by Drs. Motoaki Seki, Tetsuya Sakurai and Kazuo Shinozaki, RIKEN Plant Science Center, Yokohama, Japan. The 5′- and 3′-end sequence information was deposited from Dr. Teruaki Taji, Tokyo University of Agriculture. Full-length sequences were obtained under the support from the National Bio-Resource Project of the MEXT, Japan. .

Resource number: pdh00001-
Developer: Drs. Motoaki Seki, Tetsuya Sakurai and Kazuo Shinozaki (RIKEN PSC)
Total number of Clones: 19,429
Style of distribution: Approx. 100 ng of lyophilized plasmid is provided.
Number of clones available: 19,429 clones
Organism: Thellungiella halophila
Vector: pFLCIII (excersized from lambdaFLCIII)
Selection marker: ampicillin
Map and restriction site: Carninci et al. (2001) Genomics 77(1-2): 79-90.
Specific feature: 5′- and 3′ -sequences have been characterized. For some clones, full-length sequence is available.
Specific conditions for distribution:
  1. The RECIPIENT can use the BIOLOGICAL RESOURCE for research only.
  2. The RECIPIENT agrees to refer the RIKEN PSC as a developer and the RIKEN BRC as a provider of the BIOLOGICAL RESOURCE in any publication reporting use of it.
  3. Following manuscript should be referred in the publication on scientific journal.
    Taji, T., Sakurai, T., Mochida, K., Ishiwata, A., Kurotani, A., Totoki, Y., Toyoda, A., Sakaki, Y., Seki, M., Ono, H., Sakata, Y., Tanaka, S. and Shinozaki, K. Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila.
  4. The RECIPIENT should not distribute or transfer the BIOLOGICAL RESOURCE to any other laboratory or organization.
  5. The RECIPIENT agrees not to use the BIOLOGICAL RESOURCE for constructing microarray or macroarray without the agreement from the RIKEN PSC.
  6. The RECIPIENT can receive up to 10 clones in one order and up to 100 clones in one year as the BIOLOGICAL RESOURCE.
    (For detail please send e-mail to plant@brc.riken.jp)
 Reference:
 Taji, T., Sakurai, T., Mochida, K., Ishiwata, A., Kurotani, A., Totoki, Y., Toyoda, A., Sakaki, Y., Seki, M., Ono, H., Sakata, Y., Tanaka, S. and Shinozaki, K. Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila. BMC Plant Biol. 2008 Nov 12; 8:115. PMID: 19014467